Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797635.1_cds_XP_016456064.1_4944
CDS Infomation

[gene=LOC107780052] [db_xref=GeneID:107780052] [protein=protein PAT1 homolog 1-like] [partial=3'] [protein_id=XP_016456064.1] [location=complement(join(<6..1963,2612..2675,3427..3483,5573..5718,6286..6313))] [gbkey=CDS]
Sequence

ATGGAATTTGGTGACAACCGCCCTGCAGCGGAGGAAGTATTTGATGCATCACAATATGCG
TTCTTTGGTAATGATGTAGTGGAAGAAGTTGAACTGGGTGGGTTGGAAGATGAAGAGGAT
AGTCTTCCTCCGGTTGGGTTTGATGATGAAGAGTATCAATTAGGCCAAGATGAGGGTGAA
GCTATTGGATCTTTGTCTGAGATTGATGACCTTAATAGCACATTTTCCAAGTTGAACAAG
GATGATGGCGGCGCCATAAATCCAGGATTTATTGGTGACAGGGAATACAGAGAGAGCTCA
TCTGCTGTTGAGTGGGCACAAGATGCAGATTTTCATAATTGGATTGGTCGGAAAGCTCTT
GATGGTGAAAGCAATGCCAGCAAAAGATGGCCATCGCAGCCGTACTCTTCTGCTGCTCAC
TTTTTGGAACCGAATCCTTTGTACAGGACTTCCTCATACCCTGAGCAACAACAACAACAT
GAATATCAACAGCAAACCCCAAACCACCACTACTCCAGTGAACCAATACTCATCTCAAAA
TTACCTTTCACGTCATTTCCTCCTCCTAGTGTGAGGCATCCACATGCTTCCCCAAATAAC
CAGTCACAGCATCCGAATGGTCCAAATCAACCTGGTGGACAGCAAATGCCACTTTCCTCA
CCTAACTTACCTCCCTTTTTAAACCCTGCAAATCACTTAACTGCCTCACATCATGGCCCG
CAGTATGGTGGAAAGTTTGCTCAAGGAACGCCTCCTGGGCTTCCCCTTCATACTCAAATT
CCAAGCCAATGGTTGAAGCAATCTACTTTGTATCCTGTGGAGCAATCAAGCCTGACCAGT
AATATGATCCCGCAGCAGTTGCATCGCCAAAATGGTTTCGCACTGCCACATGGGGGATCA
CAGCAACCCCAGCGGCCTGGACAACACCATCCCTTGCATTCATCCTATGGTCATATGCCG
GGGTTGCAATCCCAACTGTTTAATCACCACATGTCTCCACCCTCGCAGGTGCTGAATAAT
TTTGATATGCTTGGGTTGGCTGATTTAAGAGATCAAAAGGCAAAACTAATGCTGAGAGGT
AGACAGGGCCTGCAGTACTCCCAACAAGGCTTTGACGTTGGTAGCCAGAGAAATAATAAT
GCATGGCCAAGATTTAGATCCAAGTACATGACAGCAGATGAATTAGAGAATATTCTTAGA
GCGCAGCTGGCTGCTACCCATAGCAATGATCCTTATGTTGATGATTATTATCACCAAGCT
TGTCTCGCCAAAAAGGCCGCTGGTGCAAAGCTGAAGCACCATTTCTGCCCAAATAATTTG
AGGGATGGTAGTGCTCGAACTCATGCTAATTCTGAGCCACATCCTTTTCTCCAGGTTGAT
GCTCTTGGAAGGGTTGCTTTCTCTTCTATTCGCAGGCCCCGTCCGCTTCTTGAAGTTGAT
CCACCAAAATCATCACCTACTGGATGCATTGAACAGAAAATATCTGAGAAACCCCTGGAG
CAAGAGCCAATGCTAGCAGCTAGGGTGACTATTGAGGATGGTCTGTGTCTACTTCTTGAT
GTTGATGATATTGACCGGTTCCTACAATTTAATCAACTTCCAGATGGAGGAGACCAGTTG
AAACGTAGGCGGCAGGTTCTGCTTGAGGGTTTGGCATCATCACTTCAACTAGTTGACCCC
CTAGGAAAAAATGGTCACTCTGTGAATTTGGCTGCTAAAGATGATGTTGTCTTCTTGAGG
ATCGTCTCGCTTCCCAAGGGCCGGAAGCTGCTAGTTCGATACTTGCAGCTTCTTTTCCCT
GGAAGTGAACTGACCAGGGTGGTTTGCATGGCTATTTTCCGGCATCTAAGGTTCTTGTTT
GGCGGGCTTCCGAGTGACCCTGGGGCAACTGAGACTACTGTGAGCCTCGGAAGGACCGTG
TCACTGTGTATTTGTGAGATGGAGCTCAAAGCACTTGCTGCCTGTCTTGCATCTGTGGTT
TGTTCAGCAGAGCCTCCTCCGCTCCGTCCTGTTGGAAGCCCTGCTGGAGATGGGGCATCT
ATTGTTCTAAAATCTCTTCTTGAGAGGGCAACTGAGATCTTAAGAGATCCCCATGCTGCT
GCCCAGTGCAGCATGCCTAATAGGTCATTCTGGCAGGCCTCGTTTGATGCATTTTTTGGG
TTACTCACGAAATACTGTTTCAACAAATACGACATCGTAATGCAATGTTTCTTCACACAA
GCCCCACCAGGTGTGGCTGTTAGTGGATCTGAT

Peptide Sequence

PEP ID

XP_016456064.1
PEP Infomation

PREDICTED: protein PAT1 homolog 1-like, partial [Nicotiana tabacum]
Sequence

MEFGDNRPAAEEVFDASQYAFFGNDVVEEVELGGLEDEEDSLPPVGFDDEEYQLGQDEGE
AIGSLSEIDDLNSTFSKLNKDDGGAINPGFIGDREYRESSSAVEWAQDADFHNWIGRKAL
DGESNASKRWPSQPYSSAAHFLEPNPLYRTSSYPEQQQQHEYQQQTPNHHYSSEPILISK
LPFTSFPPPSVRHPHASPNNQSQHPNGPNQPGGQQMPLSSPNLPPFLNPANHLTASHHGP
QYGGKFAQGTPPGLPLHTQIPSQWLKQSTLYPVEQSSLTSNMIPQQLHRQNGFALPHGGS
QQPQRPGQHHPLHSSYGHMPGLQSQLFNHHMSPPSQVLNNFDMLGLADLRDQKAKLMLRG
RQGLQYSQQGFDVGSQRNNNAWPRFRSKYMTADELENILRAQLAATHSNDPYVDDYYHQA
CLAKKAAGAKLKHHFCPNNLRDGSARTHANSEPHPFLQVDALGRVAFSSIRRPRPLLEVD
PPKSSPTGCIEQKISEKPLEQEPMLAARVTIEDGLCLLLDVDDIDRFLQFNQLPDGGDQL
KRRRQVLLEGLASSLQLVDPLGKNGHSVNLAAKDDVVFLRIVSLPKGRKLLVRYLQLLFP
GSELTRVVCMAIFRHLRFLFGGLPSDPGATETTVSLGRTVSLCICEMELKALAACLASVV
CSAEPPPLRPVGSPAGDGASIVLKSLLERATEILRDPHAAAQCSMPNRSFWQASFDAFFG
LLTKYCFNKYDIVMQCFFTQAPPGVAVSGSD

Transcript Sequence

Gene sequence data has not been registered.